ERICA website for Evolutionary Relationship Inference using a CNN-based Approach

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1. Select an ERICA model:
 
 
2. Select Data Format:
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Pop1 Sample Names (Seperated by Comma):
Pop2 Sample Names (Seperated by Comma):
Pop3 Sample Names (Seperated by Comma):
Pop4 Sample Names (Seperated by Comma):
Pop5 Sample Names (Seperated by Comma):
Format of Output Alleles (haplo or diplo):
VCF File (Generating consensus sequences from VCF file)
Fasta File (The corresponding reference sequences in fasta format.)
MSA File (A DNA sequence alignment without any other annotation. Adjacent eight lines will be recognized as belonging to one taxon. MSAs containing 32 and 40 lines are required for the four-taxon and five-taxon analyses, respectively.)
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Visualization


job id: Click here to search your job id
Output Name (Optional): Prefix of output files.
Chromosome (Optional): Specifying a chromosome name in output files.
Window Size: fold(s) of 5000 Window size for outputting and plotting.
Region: -
1-based indexes of outputting regions,default = 1: -1 (the full region)
Distance to Zero:
The threshold used for classification. Topology with probability greater than the threshold will be recorded.
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Last Modified at October 11, 2022
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